A Szentágothai János Kutatóközpont a PTE korszerű, nemzetközi tudományszervezési és menedzsment normák szerint kialakított új intézménye, amely az élettudományi, élettelen természettudományi, valamint környezettudományi oktatás...
A Szentágothai János Kutatóközpont a PTE korszerű, nemzetközi tudományszervezési és menedzsment normák szerint kialakított új intézménye, amely az élettudományi, élettelen természettudományi, valamint környezettudományi oktatás...
The main goal of the Bioinformatics Research Group is not only to concentrate and conduct research on a specific scientific problem but rather to develop and implement comprehensive bioinformatics pipelines, tools and strategy for the Szentágothai Research Centre and the University of Pécs.
The proposed strategy is based on four pillars:
The group has established a number of research collaborations with local and international research groups, developed and implemented various data analysis algorithms and methods. Some of those have already been published or are currently under submission or review.
The research group has also set up the Genomics and Bioinformatics Core Facility and started providing sequencing and data analysis collaboration-based services for its academic and industrial partners.
We are currently developing the curriculum of a Bioinformatics MSc program at the University. We have also successfully applied for an EU grant application under the ERASMUS+ program to develop bioinformatics and biostatistics competencies for biomedical students.
Zsolt Datki, Zsuzsanna Darula, Viktor Vedelek, Eva Hunyadi-Gulyas, Brian J. Dingmann, Balazs Vedelek, Janos Kalman, Peter Urban, Attila Gyenesei, Zita Galik-Olah, Bence Galik, Rita Sinka: Biofilm formation initiating rotifer-specific biopolymer and its predicted components, International Journal of Biological Macromolecules, Volume 253, Part 5, 2023,127157, ISSN 0141-8130, https://doi.org/10.1016/j.ijbiomac.2023.127157
Margot Otto, József Geml, Ádám I. Hegyi, Júlia Hegyi-Kaló, József Kun, Attila Gyenesei, Kálmán Z. Váczy: Metatranscriptomic analyses of grapes reveal differences in expressed functional genes of filamentous and yeast fungi during noble rot and grey rot, Fungal Ecology, Volume 65,2023,101277,ISSN 1754-5048, https://doi.org/10.1016/j.funeco.2023.101277.
Champramary S, Indic B, Szűcs A, Tyagi C, Languar O, Hasan KMF, Szekeres A, Vágvölgyi C, Kredics L and Sipos G (2023) The mycoremediation potential of the armillarioids: a comparative genomics analysis. Front. Bioeng. Biotechnol. 11:1189640. doi: 10.3389/fbioe.2023.1189640
Sahu, N., Indic, B., Wong-Bajracharya, J. et al. Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nat Microbiol 8, 1668–1681 (2023). https://doi.org/10.1038/s41564-023-01448-1
Felső R, Lányi É, Erhardt É, Laufer Z, Kardos D, Herczeg R, Gyenesei A, Hollódy K, Molnár D. Total sleep deprivation decreases saliva ghrelin levels in adolescents. J Sleep Res. 2023 Apr;32(2):e13746. doi: 10.1111/jsr.13746. Epub 2022 Oct 11. PMID: 36217837
Denes V, Lukats A, Szarka G, Subicz R, Mester A, Kovacs-Valasek A, Geck P, Berta G, Herczeg R, Postyeni E, Gyenesei A, Gabriel R. Long-term Effects of the pituitary-adenylate cyclase-activating Polypeptide (PACAP38) in the Adult Mouse Retina: Microglial Activation and Induction of Neural Proliferation. Neurochem Res. 2023 Jul 19. doi: 10.1007/s11064-023-03989-7. Epub ahead of print. PMID: 37466802.
Horváth, M.; Kovács, T.; Kun, J.; Gyenesei, A.; Damjanova, I.; Tigyi, Z.; Schneider, G. Virulence Characteristics and Molecular Typing of Carbapenem-Resistant ST15 Klebsiella pneumoniae Clinical Isolates, Possessing the K24 Capsular Type. Antibiotics 2023, 12, 479. https://doi.org/10.3390/antibiotics12030479.
Apjok, G., Számel, M., Christodoulou, C. et al. Characterization of antibiotic resistomes by reprogrammed bacteriophage-enabled functional metagenomics in clinical strains. Nat Microbiol (2023). https://doi.org/10.1038/s41564-023-01320-2
Friston, Dominic Anthony; Cuddihy, Joshua; Souza Luiz, Jessica; Truong, An Hoai; Ho, Laptin; Basra, Meirvaan; Santha, Peter; Oszlacs, Orsolya; de Sousa Valente, Joao; Marczylo, Time; Junttila, Sini; Laycock, Helen; Collins, Declan; Vizcaychipi, Marcela; Gyenesei, Attila; Takats, Zoltan; Jancso, Gabor; Want, Elizabeth; Nagy, Istvan: Elevated 18:0 lysophosphatidylcholine contributes to the development of pain in tissue injury. PAIN 164(2):p e103-e115, February 2023. | DOI: 10.1097/j.pain.0000000000002709
Neparáczki E, Kis L, Maróti Z, Kovács B, Varga GIB, Makoldi M, Horolma P, Éva Teiszler, Tihanyi B, Nagy PL, Maár K, Gyenesei A, Schütz O, Dudás E, Török T, Pascuttini-Juraga V, Peharda I, Vizi LT, Horváth-Lugossy G, Kásler M.: The genetic legacy of the Hunyadi descendants . Heliyon. 2022 Nov 17;8(11):e11731. doi: 10.1016/j.heliyon.2022.e11731
Felső R., Lányi,E., Erhardt,E., Laufer,Z., Kardos, D., Herczeg, R., Gyenesei, A., Hollódy, K., & Molnár,D. (2022). Total sleep deprivation decreases saliva ghrelinlevels in adolescents.Journal of Sleep Research, e13746. https://doi.org/10.1111/jsr.137468of8
Kiss F, Kormos V, Szőke É, Kecskés A, Tóth N, Steib A, Szállási Á, Scheich B, Gaszner B, Kun J, Fülöp G, Pohóczky K, Helyes Z. Functional Transient Receptor Potential Ankyrin 1 and Vanilloid 1 Ion Channels Are Overexpressed in Human Oral Squamous Cell Carcinoma. Int J Mol Sci. 2022 Feb 8;23(3):1921. doi: 10.3390/ijms23031921. PMID: 35163843; PMCID: PMC8836603.
Datki Z, Balazs E, Galik B, Sinka R, Zeitler L, Bozso Z, Kalman J, Hortobagyi T, Galik-Olah Z. The interacting rotifer-biopolymers are anti- and disaggregating agents for human-type beta-amyloid in vitro. Int J Biol Macromol. 2022 Mar 15;201:262-269. doi: 10.1016/j.ijbiomac.2021.12.184. Epub 2022 Jan 7. PMID: 34999044.
Datki Z, Sinka R, Galik B, Galik-Olah Z. Particle-dependent reproduction and exogenic biopolymer secretion of protozoa co-cultured rotifers. Int J Biol Macromol. 2022 Jun 30;211:669-677. doi: 10.1016/j.ijbiomac.2022.05.020. Epub 2022 May 16. PMID: 35588974.
Hamar Á, Filipánits K, Váradi A, Váradi-Rácz R, Gellén HO, Futács K, Urbán P, Kovacs GL, Gombos K. Diagnostic accuracy of SARS-CoV-2 Panbio™ rapid antigen diagnostic tests in a 4,440-case clinical follow-up. Front Med (Lausanne). 2022 Aug 2;9:908127. doi: 10.3389/fmed.2022.908127. PMID: 35983094; PMCID: PMC9380887.
Kurucz K, Zeghbib S, Arnoldi D, Marini G, Manica M, Michelutti A, Montarsi F, Deblauwe I, Van Bortel W, Smitz N, Pfitzner WP, Czajka C, Jöst A, Kalan K, Šušnjar J, Ivović V, Kuczmog A, Lanszki Z, Tóth GE, Somogyi BA, Herczeg R, Urbán P, Bueno-Marí R, Soltész Z, Kemenesi G. Aedes koreicus, a vector on the rise: Pan-European genetic patterns, mitochondrial and draft genome sequencing. PLoS One. 2022 Aug 1;17(8):e0269880. doi: 10.1371/journal.pone.0269880. PMID: 35913994; PMCID: PMC9342712.
Aczél T, Benczik B, Ágg B, Körtési T, Urbán P, Bauer W, Gyenesei A, Tuka B, Tajti J, Ferdinandy P, Vécsei L, Bölcskei K, Kun J, Helyes Z. Disease- and headache-specific microRNA signatures and their predicted mRNA targets in peripheral blood mononuclear cells in migraineurs: role of inflammatory signalling and oxidative stress. J Headache Pain. 2022 Sep 2;23(1):113. doi: 10.1186/s10194-022-01478-w. PMID: 36050647; PMCID: PMC9438144.
Boros Á, Albert M, Urbán P, Herczeg R, Gáspár G, Balázs B, Cságola A, Pankovics P, Gyenesei A, Reuter G. Unusual "Asian-origin" 2c to 2b point mutant canine parvovirus (Parvoviridae) and canine astrovirus (Astroviridae) co-infection detected in vaccinated dogs with an outbreak of severe haemorrhagic gastroenteritis with high mortality rate in Hungary. Vet Res Commun. 2022 Sep 21:1–7. doi: 10.1007/s11259-022-09997-2. Epub ahead of print. PMID: 36129562; PMCID: PMC9490711.
Jia X, Bene J, Balázs N, Szabó K, Berta G, Herczeg R, Gyenesei A, Balogh P. Age-Associated B Cell Features of the Murine High-Grade B Cell Lymphoma Bc.DLFL1 and Its Extranodal Expansion in Abdominal Adipose Tissues. J Immunol. 2022 Jun 15;208(12):2866-2876. doi: 10.4049/jimmunol.2100956. Epub 2022 Jun 3. PMID: 35867673.
Pohóczky K, Kun J, Szentes N, Aczél T, Urbán P, Gyenesei A, Bölcskei K, Szőke É, Sensi S, Dénes Á, Goebel A, Tékus V, Helyes Z. Discovery of novel targets in a complex regional pain syndrome mouse model by transcriptomics: TNF and JAK-STAT pathways. Pharmacol Res. 2022 Aug;182:106347. doi: 10.1016/j.phrs.2022.106347. Epub 2022 Jul 9. PMID: 35820612.
Majláth I, Éva C, Hamow KÁ, Kun J, Pál M, Rahman A, Palla B, Nagy Z, Gyenesei A, Szalai G, Janda T. Methylglyoxal induces stress signaling and promotes the germination of maize at low temperature. Physiol Plant. 2022 Jan;174(1):e13609. doi: 10.1111/ppl.13609. Epub 2021 Dec 15. PMID: 34851527.
Vokó Z, Kiss Z, Surján G, Surján O, Barcza Z, Pályi B, Formanek-Balku E, Molnár GA, Herczeg R, Gyenesei A, Miseta A, Kollár L, Wittmann I, Müller C, Kásler M. Nationwide effectiveness of five SARS-CoV-2 vaccines in Hungary-the HUN-VE study. Clin Microbiol Infect. 2022 Mar;28(3):398-404. doi: 10.1016/j.cmi.2021.11.011. Epub 2021 Nov 25. PMID: 34838783; PMCID: PMC8612758.
Pham D, Polgar B, Toth T, Jungling A, Kovacs N, Balas I, Pal E, Szabo D, Fulop BD, Reglodi D, Szanto Z, Herczeg R, Gyenesei A, Tamas A. Examination of pituitary adenylate cyclase-activating polypeptide in Parkinson's disease focusing on correlations with motor symptoms. Geroscience. 2022 Apr;44(2):785-803. doi: 10.1007/s11357-022-00530-6. Epub 2022 Feb 26. PMID: 35220508; PMCID: PMC9135934.
Maasz A, Hadzsiev K, Ripszam R, Zsigmond A, Maka E, Knezy K, Lesch B, Nemeth A, Bene J, Galik B, Gyenesei A, Melegh B. TUBB4B gene mutation in Leber phenotype of congenital amaurosis syndrome associated with early-onset deafness. Eur J Med Genet. 2022 Apr;65(4):104471. doi: 10.1016/j.ejmg.2022.104471. Epub 2022 Feb 28. PMID: 35240325.
Komlósi K, Gyenesei A and Bene J (2022) Editorial: Copy Number Variation in Rare Disorders. Front. Genet. 13:898059. doi: 10.3389/fgene.2022.898059
Tompa, M.; Kraboth, Z.; Galik, B.; Kajtar, B.; Gyenesei, A.; Kalman, B. Epigenetic Suppression of the IL-7 Pathway in Progressive Glioblastoma. Biomedicines 2022, 10, 2174. https://doi.org/10.3390/ biomedicines10092174
Mutuku, C.; Melegh, S.; Kovacs, K.; Urban, P.; Virág, E.; Heninger, R.; Herczeg, R.; Sonnevend, Á.; Gyenesei, A.; Fekete, C.; et al. Characterization of β-Lactamases and Multidrug Resistance Mechanisms in Enterobacterales from Hospital Effluents and Wastewater Treatment Plant. Antibiotics 2022, 11, 776. https://doi.org/10.3390/ antibiotics11060776
Hegyi, Á.I.; Otto, M.; Geml, J.; Hegyi-Kaló, J.; Kun, J.; Gyenesei, A.; Pierneef, R.; Váczy, K.Z. Metatranscriptomic Analyses Reveal the Functional Role of Botrytis cinerea in Biochemical and Textural Changes during Noble Rot of Grapevines. J. Fungi 2022, 8, 378. https://doi.org/10.3390/jof804037
Otto, M., Geml, J., Hegyi, Á. I., Hegyi-Kaló, J., Pierneef, R., Pogány, M., Kun, J., Gyenesei, A., Váczy, K. Z. Botrytis cinerea expression profile and metabolism differs between noble and grey rot of grapes. Food Microbiology, 2022, 104037. https://doi.org/10.1016/j.fm.2022.10403
Gervain J, Sz. Bartha K, B. Hodovánszky E, Kadlecsik L, Herczeg R, Gyenesei A, Simon J. : Monitoring of anti- SARS-CoV-2 IgG antibody immune responses in two cohorts of Hungarian healthcare workers following infection or immunization Orv Hetil. 2022; 163(12): 455–462.
Takács-Lovász, K.; Kun, J.; Aczél, T.; Urbán, P.; Gyenesei, A.; Bölcskei, K.; Szőke, É.; Helyes, Z. PACAP-38 Induces Transcriptomic Changes in Rat Trigeminal Ganglion Cells Related to Neuroinflammation and Altered Mitochondrial Function Presumably via PAC1/VPAC2 Receptor-Independent Mechanism. Int. J. Mol. Sci. 2022, 23, 2120. https://doi.org/10.3390/ijms23042120
Zeghbib, S.; Somogyi, B.A.; Zana, B.; Kemenesi, G.; Herczeg, R.; Derrar, F.; Jakab, F. The Algerian Chapter of SARS-CoV-2 Pandemic: An Evolutionary, Genetic, and Epidemiological Prospect. Viruses 2021, 13, 1525. https://doi.org/10.3390/v13081525
Sawicka-Smiarowska,E.; Bondarczuk, K.; Bauer, W.; Niemira, M.; Szalkowska, A.; Raczkowska, J.; Kwasniewski, M.; Tarasiuk, E.; Dubatowka, M.; Lapinska, M.; et al. Gut Microbiome in Chronic Coronary Syndrome Patients. J. Clin. Med. 2021, 10,5074. https://doi.org/10.3390/ jcm10215074
Aczél, T., Körtési, T., Kun, J. et al. Identification of disease- and headache-specific mediators and pathways in migraine using blood transcriptomic and metabolomic analysis. J Headache Pain 22, 117 (2021). https://doi.org/10.1186/s10194-021-01285-9
Bauer W.; Gyenesei A.; Krętowski A. : Review: The Multifactorial Progression from the Islet Autoimmunity to Type 1 Diabetes in Children. Int. J. Mol. Sci. 2021, 22(14), 7493; doi:10.3390/ijms22147493
Schvarcz, C.A.; Danics, L.; Krenács, T.; Viana, P.; Béres, R.; Vancsik, T.; Nagy, Á.; Gyenesei, A.; Kun, J.; Fonović, M.; Vidmar, R.; et al.: Repeated Modulated Electro‐Hyperthermia Induces a Prominent Local Stress Response and Growth Inhibition in Triple Negative Mouse Breast Cancer Isografts. Cancers 2021, 13, 1744. https://doi.org/10.3390/ cancers13071744
Kraboth, Z.; Kajtár, B.; Gálik, B.; Gyenesei, A.; Miseta, A.; Kalman, B. Involvement of the Catecholamine Pathway in Glioblastoma Development. Cells 2021, 10, 549. https://doi.org/10.3390/cells10030549
Szabo, D.; Sarszegi, Z.; Polgar, B.; Saghy, É.; Nemeth, A.; Reglodi, D.; Makkos, A.; Gorbe, A.; Helyes, Z.; Ferdinandy, P.; et al.: PACAP-38 in Acute ST-Segment Elevation Myocardial Infarction in Humans and Pigs: A Translational Study. International Journal of Moecular Sciences 2021, 22, 2883. https://doi.org/10.3390/ijms22062883
Gombos K., Gálik B.,Kalács K.I., Gödöny K., Várnagy Á., Bódis J., Alpár D., Gyenesei A., Kovács. L.G. : NGS-based pipeline for routine non-invasive pre-implantation genetic assessment in IVF,International Journal of Molecular Sciences, 2021, 22, 2443 https://doi.org/10.3390/ijms22052443
Steffen PA, Altmutter C, Dworschak E, Junttila S, Gyenesei A, Zhu X, Kockmann T, Ringrose L.: The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival. Chromosoma. 2021 Sep;130(2-3):215-234. doi: 10.1007/s00412-021-00762-z.
Garai K, Adam Z, Herczeg R, Banfai K, Gyebrovszki A, Gyenesei A, Pongracz JE, Wilhelm M, Kvell K.: Physical Activity as a Preventive Lifestyle Intervention Acts Through Specific Exosomal miRNA Species-Evidence From Human Short- and Long-Term Pilot Studies. Front Physiol. 2021 Aug 2;12:658218. doi: 10.3389/fphys.2021.658218
Tamás A, Tóth D, Pham D, Loibl C, Rendeki S, Csontos C, Rozanovic M, Bogár L, Polgár B, Németh J, Gyenesei A, Herczeg R, Szántó Z, Reglődi D.: Changes of pituitary adenylate cyclase activating polypeptide (PACAP) level in polytrauma patents in the early post-traumatic period. Peptides. 2021 Sep 1;146:170645. doi: 10.1016/j.peptides.2021.170645
Gombos K, Földi M, Kiss S, Herczeg R, Gyenesei A, Geiger L, Csabai D, Futács K, Nagy T, Miseta A, Somogyi BA, Hegyi P, Szentesi A.: Analysis of COVID-19-Related RT-qPCR Test Results in Hungary: Epidemiology, Diagnostics, and Clinical Outcome. Front. Med. 2021 Jan 26;7:625673. doi: 10.3389/fmed.2020.625673.
Tompa M, Kajtar B, Galik B, Gyenesei A, Kalman B.: DNA methylation and protein expression of Wnt pathway markers in progressive glioblastoma. Pathol Res Pract. 2021 Apr 5;222:153429. doi: 10.1016/j.prp.2021.153429.
Balazs E, Galok-Olah Z, Galik B, Somogyvari F, Kalman J, Datki Zs. : External modulation of Rotimer exudate secretion in monogonantrotifers. Ecotoxicology and Environmental safety 220 Paper: 112399, 8p. (2021)
Bence Galik, Jonathan J.M. Landry, Joanna M. Kirkpatrick, Markus Hsi-Yang Fritz, Bianka Baying, Jonathon Blake, Bettina Haase, Paul G. Collier, Rajna Hercog, Dinko Pavlinic, Peggy Stolt-Bergner, Hüseyin Besir, Kim Remans, Attila Gyenesei, Vladimir Benes. Extensive OMICS resource for Sf21 and Tni cell lines. bioRxiv 2021.04.06.438574; doi: https://doi.org/10.1101/2021.04.06.438574
N Turić, M Temunović, I Szivák, R Herczeg, G Vignjević, Z Csabai: Importance of floodplains for water beetle diversity: a crucial habitat for the endangered beetle Graphoderus bilineatus in Southeastern Europe Biodiversity and Conservation 30 (6), 1781-1801
M Madai, G Horváth, R Herczeg, B Somogyi, B Zana, F Földes: Effectiveness Regarding Hantavirus Detection in Rodent Tissue Samples and Urine,Viruses 13 (4), 570
V Temesfői, R Herczeg, Z Lőcsei, K Sebestyén, Z Sebestyén, L Mangel: Should We Reconsider the Necessity of a Refinement of Prostate Cancer Risk Classification and Radiotherapy Treatment Strategy? Experiences from a Retrospective Analysis of Data. Journal of Clinical Medicine 10 (1), 110
Gombos K., Földi M., Kiss Sz., herczeg R., Gyenesei A., Geiger L., Csabai D., Futács K., Nagy T., Miseta A., Somogyi B.A., hegyi P., Szentesi A. : Analysis of COVID-19-related RT-qPCR test results in Hungary: Epidemology, dianostics and clinical outcome . Frontiers in Medicine, 2020
Salgado D, Armean IM, Baudis M et al.: The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research [version 1; peer review: awaiting peer review]. F1000Research 2020, 9(ELIXIR):1229 (https://doi.org/10.12688/f1000research.24887.1)